Natalie DeForest

Natalie DeForest

Bioinformatics Scientist & Human Geneticist

Univ. of California San Diego

Biography

I received my PhD in Biomedical Sciences and Bioinformatics from the University of California (UC) San Diego. My research interests center on harnessing the power of human genetics and computational genomics to uncover and validate novel therapeutics. Outside of work, you can find me rock climbing, playing tennis, or training for my next triathlon.

Interests
  • Statistical genetics
  • Computational genomics
  • Functional genomics
  • Metabolic disease
Education
  • PhD in Biomedical Sciences with Specialization in Bioinformatics, 2023

    Univ. of California San Diego

  • BSc in Pharmaceutical Chemistry, Minor in Quantitative Biology & Bioinformatics, summa cum laude, 2018

    Univ. of California Davis

Skills

Proficiency in scripting languages (R, Python)
Next-generation sequencing (NGS), RNA-seq, ATAC-seq, ChIP-seq analysis
High performance computing, Git version control
Human population genetics
Biostatistics
Written and oral communication

Publications and Presentations

(2023). Genome-wide discovery and integrative genomic characterization of insulin resistance loci using serum triglycerides to HDL cholesterol ratio. Manuscript under journal peer review, November 2023.

(2023). Human gain-of-function variants in HNF1A confer protection from diabetes but independently increase hepatic secretion of atherogenic lipoproteins. Cell Genomics, May 2023.

PDF DOI

(2023). Glycocalyx engineering with heparan sulfate mimetics attenuates Wnt activity during adipogenesis to promote glucose uptake and metabolism. Journal of Biological Chemistry, March 2023.

DOI

(2022). A seven-transmembrane protein-TM7SF3 resides in nuclear speckles and regulates alternative splicing. iScience, November 2022.

PDF DOI

(2022). Activation of PPARG in skeletal muscle and visceral adipose tissues ameliorate NASH biomarkers in humans: implications for therapeutic targeting. [Poster session], Keystone Conference: Inter Organ Crosstalk in NASH. Whistler, Canada.

Conference Webpage

(2022). Genetics of Type 2 Diabetes: Implications from Large-Scale Studies. Current Diabetes Reports, March 2022.

PDF DOI

(2021). Human Genetics to Identify Therapeutic Targets for NAFLD: Challenges and Opportunities. Frontiers in Endocrinology, December 2021.

DOI

(2020). In Vitro Hepatic Uptake in Human and Monkey Hepatocytes in the Presence and Absence of Serum Protein and Its In Vitro to In Vivo Extrapolation. Drug Metabolism and Disposition, December 2020.

PDF DOI

(2019). Characterization of Hepatocytes Uptake Clearance of Organic Anion Transporting Polypeptide (OATPs) Substrates in Human and Cynomolgus Cryopreserved Hepatocytes. Federation of American Societies for Experimental Biology (FASEB), April 2019.

DOI

Experience

 
 
 
 
 
Graduate Student Researcher
Sep 2018 – Present UC San Diego Dept. of Medicine
 
 
 
 
 
Research Intern
Gilead Sciences
Jun 2018 – Sep 2018 Foster City, CA
 
 
 
 
 
Research Intern
Cytokinetics
Jun 2017 – Sep 2017 South San Francisco, CA
 
 
 
 
 
Honors Undergraduate Researcher
Laboratory of Dr. Xi Chen
Aug 2016 – Jun 2018 UC Davis Dept. of Chemistry
 
 
 
 
 
Clinical Data Intern
Pharmacyclics, an AbbVie company
Jun 2016 – Sep 2016 Sunnyvale, CA

Awards

Institutional National Research Service Award (T32) Grant Recipient
Best Poster Awardee - 2nd Place
Departmental Highest Honors Research Award
Thesis: Chemoenzymatic Synthesis of Sialyl Lewis X, A Biologically Important Tetrasaccharide, and the Cloning and Characterization of Enzymes for Carbohydrate Synthesis